Mods not staying checked in load order.

Boxnogged

First time out of the vault
I have a problem with some new mods (specifically downloaded from Nexus, like NV Interiors or A World of Pain) where they will uncheck themselves in the load order after I have ticked them. This only applies to recent mods. Any I have downloaded before 2 days ago still work.

Wyre Flash gives me a message, stating that "Missing files have been removed from the load list", and then lists the .esms I had previously downloaded. I've tried in FOMM as well to get the mods working yet they still automatically turn themselves off after I exit their respective tabs. If anyone has a solution I would greatly appreciate it, thanks.
 
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